YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109691494
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.43
Transmembrane Helix	5	19	0.44
Non-Cytoplasmic	20	31	0.68
Transmembrane Helix	32	50	0.90
Cytoplasmic	51	59	0.78
Transmembrane Helix	60	82	0.88
Non-Cytoplasmic	83	758	0.94
Transmembrane Helix	759	779	0.93
Cytoplasmic	780	786	0.83
Transmembrane Helix	787	807	0.89
Non-Cytoplasmic	808	821	0.68
Transmembrane Helix	822	840	0.89
Cytoplasmic	841	845	0.84
Transmembrane Helix	846	865	0.92
Non-Cytoplasmic	866	889	0.85
Transmembrane Helix	890	914	0.91
Cytoplasmic	915	933	0.96
Transmembrane Helix	934	957	0.89
Non-Cytoplasmic	958	971	0.91
Transmembrane Helix	972	990	0.93
Cytoplasmic	991	997	0.88
Transmembrane Helix	998	1017	0.91
Non-Cytoplasmic	1018	1036	0.75
Transmembrane Helix	1037	1053	0.96
Cytoplasmic	1054	1063	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFAFFCALA TFIESAYGTP TAWAMVYDTF WFEYIQLLLG INLLCGMFRY KMFGLKKLSL  60
   61 MVFHISFLFI LVGSAMTRYA GFEGILAIRE HTQNSLIESS KTSLRISAIK DGERYSAVND 120
  121 RYIGNLPFAN SFKLKLNLGD DQVVLKYKDL ILNAHYTYKE NNNSDPLLVL MLSQKGSQGV 180
  181 DVKFEKGEVK NIEGVNFAFM NDNVKAPFVK IDENLTLSSS ENLHFLSMLN GQNLDLKIGE 240
  241 KANAKERRLY EINDISFVVK AASLHAQEAL EGSNRPQDES FWLWFKSAWL EVGRTMLIST 300
  301 FGEPQNWKNS LLLHFKDFAL SNENKNLELT GSSALKLELS YKNESKEFYI FEYNKPIMIE 360
  361 LSGQKFFISW ALSYEQLPFD IYLRDFVLDR YPGSMSPASY ASEITVKNNN ENFDYRIFMN 420
  421 NVLDYDGYRF YQSSYDQDEK GTVLSVNKDP GKIPTYIGYF LLCLGMFMNF LNPHSRFRTL 480
  481 ARLINKDTLK HTSVIIFILL LSFSSEKTFA QDLNSTLPVV NTNHAKALAT LIVQKSADGR 540
  541 MVPFDTLSRE ILEKIHQSNS YKGQNSNAVM LSMLVDVDKW QMEPFILMPQ NQAVRDAIAN 600
  601 ILEIPSAKYI AYKDFFDENN RYKLQKYVEN ANRKNPNARG VFDKEIIKLD ERVNVVNLVF 660
  661 SGELFKFIPV QNNPNNVWLA PFSAVTTLKG DEGYIVLALI QNYFSAVENA FKDGNWTRTD 720
  721 EGLKFIKEYQ EKIGYKVMPS KTKVEMEIFS NKAEIFVKLA PVYLIAGFLL LILVFFKMVV 780
  781 PNLKIYFIFK VVYVLNVLAF VIHTVGLGLR AYLSGHAPWS NGYESMVYIA WALSLSGIFF 840
  841 SRKSPIALSL TSILSGVVLM VAHLSEMNPQ ITNLVPVLNS YWLSIHVSVI TASYGFLGLC 900
  901 ALLGIFTLFL MCFLNKDGKY NLNILRNITE ATRINEMAMI FGLCLLTVGN FLGAIWANES 960
  961 WGRYWSWDSK ETWALVSILV YAAILHLRMI PKYCNQFVFA LWSMFAYWVI IMTYFGVNYF1020
 1021 LTGLHSYAAG EAAQIPNYVY WGFALMVVLA FFARRKRNFV GKL