YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88951071, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEASHIPPI SLRGTRFFIR WCIQEFMMPA FIIAGTHSGV GKTTVTLGLM AALRRRGMTV  60
   61 QPFKVGPDFI DPTHHTAICG RHSRNLDTFM MGEDGVRRSF LSAIRGADVA VVEGVMGLYD 120
  121 GIGGGEEAST AHVAKVLSIP VVLVVNVHGM SRSAAALIHG FRSFDPSVNI IGVILNQVGS 180
  181 ERHLEALRES INFRIFGALP RRRSISLPSR HLGLAMGFEI DHDVNALADL VEENVLLDEL 240
  241 LEACALPVDV PERESTGSVE SCVRIAIALD EAFCFYYQDN IDRLRSTGAE IIPFSPIRDA 300
  301 LPDVDGIYIG GGYPELHATA LEAGRCIPQI REAASDGMPI YGECGGLMYL GEHLVVEDRS 360
  361 YKMTGVLPAS TMMTKRLQAL GYVEAEVVRD NPFSQKGSVI RGHEFHYSRM ECDRDAKFAY 420
  421 RLRRGRGIEN GMDGLIEHMT LGGYLHAHFA SFPLERFMES CIAYKRR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.60
Transmembrane Helix	21	40	0.62
Non-Cytoplasmic	41	467	0.89