YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157164109, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	34	0.83
Non-Cytoplasmic	35	52	0.85
Transmembrane Helix	53	73	0.84
Cytoplasmic	74	87	0.79
Transmembrane Helix	88	109	0.89
Non-Cytoplasmic	110	115	0.63
Transmembrane Helix	116	134	0.87
Cytoplasmic	135	141	0.81
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	172	0.82
Transmembrane Helix	173	195	0.93
Cytoplasmic	196	215	0.96
Transmembrane Helix	216	237	0.92
Non-Cytoplasmic	238	242	0.81
Transmembrane Helix	243	262	0.90
Cytoplasmic	263	273	0.82
Transmembrane Helix	274	295	0.92
Non-Cytoplasmic	296	306	0.77
Transmembrane Helix	307	327	0.91
Cytoplasmic	328	336	0.72
Transmembrane Helix	337	355	0.90
Non-Cytoplasmic	356	361	0.62
Transmembrane Helix	362	384	0.80
Cytoplasmic	385	397	0.66
Transmembrane Helix	398	419	0.90
Non-Cytoplasmic	420	430	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAFLFILL FALMLIGVPV AVSLGASTVL TIIFFTDFDG DTIAMIPQII FDGINKFSLM  60
   61 AIPMFILAGN LLSKGGSARR IIDFAKSMVG HLPGGLPMSA IFACIIFAAV SGSSPATVVA 120
  121 IGSIMFAAIK EAGYPKEYAV GGITTAGSLG ILIPPSVVMI VYGVTAEVSI GKLFMAGVVP 180
  181 GLMLGGMMLV QTYVGAKKLG FKATKAEPFK VRVQKFAKAF WALLIVVVVI GGIYGGIFTP 240
  241 TEAAAASAVY ALFISLFIYR DIKIKDLWDI CLDSALTTAM IFFIIANAVV FAYLLTSEQI 300
  301 PQAIASMILD ANIGMIGFLI FVNILLFIMG QFMEPSSVIM IMVPLLLPIA TQLGVDPIHF 360
  361 GIILVVNMEI GMVTPPVGLN LFVASGLTNM NLKEVIVACL PWTLTLFFGL ILVTYIPQIS 420
  421 LWLPNIMYGH