YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109671410
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.68
Transmembrane Helix	5	23	0.73
Non-Cytoplasmic	24	34	0.75
Transmembrane Helix	35	56	0.87
Cytoplasmic	57	68	0.78
Transmembrane Helix	69	90	0.93
Non-Cytoplasmic	91	717	0.93
Transmembrane Helix	718	739	0.91
Cytoplasmic	740	750	0.82
Transmembrane Helix	751	772	0.91
Non-Cytoplasmic	773	780	0.81
Transmembrane Helix	781	799	0.93
Cytoplasmic	800	805	0.80
Transmembrane Helix	806	826	0.93
Non-Cytoplasmic	827	848	0.87
Transmembrane Helix	849	872	0.93
Cytoplasmic	873	891	0.95
Transmembrane Helix	892	914	0.89
Non-Cytoplasmic	915	929	0.90
Transmembrane Helix	930	948	0.95
Cytoplasmic	949	954	0.93
Transmembrane Helix	955	980	0.80
Non-Cytoplasmic	981	995	0.85
Transmembrane Helix	996	1013	0.96
Cytoplasmic	1014	1021	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAIVLMII FAIASGAATI IESKTSTEAA WYYVYGAGWF ALIQLLLGIN LAFNIFRYNL  60
   61 IDPKKLPSLI FHLGFIVILI GAGITRYLGF EADMHIRENT ASNVVSTKVS YINLTALNDK 120
  121 GEEISSAMPL GLADVKKGFD LRLKTADGEA SLKFKEFVPN ASYKFVNDDS GKPVVEFVVS 180
  181 NESESEEIFL LEEEEARVGD ISFIFNAKPD ENKKYVLFRL NDGNFTVTSN ADLSKFTMAD 240
  241 SSKTELKAGS VNEFGTGSLY TISNINFAPR LVSAHASRKL VSSKDSEFNA LIAELNYKGE 300
  301 SKEMHVFYNL MEPSRIAVAG QKFNASWGAQ QIKLPFSLYL KDFELKRYPG SNSPMSYSSE 360
  361 VVVKDGTNDP GFDYRIYMNH VLDYDGYRFF QSSYDTDEKG TILSVNKDPG KIPTYIGYFL 420
  421 LGLGFLLNVI NPNSRFRKLA KLIDNESIKG AKKVAALIAV LLLGLNFSSL KAEDFLPHIS 480
  481 KEHADKLARL IVQSPDGRMK PFDTLSKEVL NKIHRGESIG SLNSNQAMLS IMVTPDFWRN 540
  541 EKIIALGQSK ELKKELGVDE NARYASFDEF FKATKDGGSE YKLTKFAEIA NRKHPGSRNT 600
  601 FDKDVIKIDE RLNVFYMIFI GEIFKIFPKQ DDPSNSWYSP ASAMMYFSPK EAELVVGMMR 660
  661 EYFSAVDAAT KDNDWSKADA ALEKISAYQH KYGAAVMPSE KKIDIEILFN KFQVFDRLTP 720
  721 IYLLAGLALL LFVFVKMLAP KVQINGIVKA VYIINLLAFL AHTVGLGLRW YIAEHAPWSN 780
  781 AYESMVYIAW ALGLSGIIFA KRSPIALALT SILAGVTLFV AHLSWMDPQI TTLVPVLQSY 840
  841 WLTIHVSIIT ASYGFLGLCS LLGGFTLLLI ILQNKKKPNA EIARNITEAT RINEMAMILG 900
  901 LSLLTLGNFL GGVWANESWG RYWGWDSKET WALVSILVYA AVLHMRFIPK LNNQYAFAVA 960
  961 SFFAYWSIIM TYFGVNFYLA GMHSYAAGDP LPVPDFVWIS IAIMIAMSVL AFTKRSLCTR1020
 1021 L