YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109640980, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSCSTWNS DEGENVLGTI VNSLAIIGGA LVGILFGKAL PEKIKKTVIQ GIGLAVILIG  60
   61 LRMALTTNNP LVVIGSLVLG GIIGEWIDIE DKLQQLGKWL ESKFAKGGNG NFTKGFVSSS 120
  121 LMFCVGAMAI MGALESGLKG VHDTLYAKSM LDGITSIVLA SSMGIGVLVS AVPVFLYQGG 180
  181 ITISAALLQG FLSDPVIAEM SATGGLLIVG IGLNILEIKE IKVGNLLPAI FVAVPITMLL 240
  241 AQMA

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.93
Transmembrane Helix	16	37	0.92
Cytoplasmic	38	46	0.81
Transmembrane Helix	47	66	0.82
Non-Cytoplasmic	67	114	0.76
Transmembrane Helix	115	134	0.90
Cytoplasmic	135	153	0.73
Transmembrane Helix	154	177	0.89
Non-Cytoplasmic	178	195	0.79
Transmembrane Helix	196	216	0.92
Cytoplasmic	217	222	0.84
Transmembrane Helix	223	242	0.92
Non-Cytoplasmic	243	244	0.75