YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|219536621, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	404	0.80
Transmembrane Helix	405	429	0.83
Non-Cytoplasmic	430	435	0.67
Transmembrane Helix	436	456	0.59
Cytoplasmic	457	463	0.50
Transmembrane Helix	464	488	0.87
Non-Cytoplasmic	489	513	0.65
Transmembrane Helix	514	532	0.82
Cytoplasmic	533	544	0.67
Transmembrane Helix	545	564	0.82
Non-Cytoplasmic	565	572	0.67
Transmembrane Helix	573	594	0.91
Cytoplasmic	595	631	0.94
Transmembrane Helix	632	652	0.94
Non-Cytoplasmic	653	665	0.91
Transmembrane Helix	666	687	0.90
Cytoplasmic	688	696	0.79
Transmembrane Helix	697	719	0.80
Non-Cytoplasmic	720	726	0.61
Transmembrane Helix	727	747	0.91
Cytoplasmic	748	754	0.91
Transmembrane Helix	755	779	0.89
Non-Cytoplasmic	780	784	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNELEIGR SASIISVGGK GALRQHFLDM GVIPGAIVTM VKLAPLGDPM EVRIHGYELT  60
   61 LRLADAEKIE ILPVDDVEQL AEKSKKREFV KHPGLGETGI FHTKADGDPL PDSQLLTFAL 120
  121 AGNQNCGKTT LFNQLTGSNQ RVGNFPGVTV DRKDGVIKGH ANTLVTDLPG IYSMSPYSNE 180
  181 ELVTRQFLLQ DKPKGIINIV DATNIERNLY LTIQLMELNI PMVLALNMMD EVRENGGSIH 240
  241 INEMENRLGI PVVPIAASKN EGIQELVDHA IHVAKNQERP GRMDFCDPDH DNGAVHRCLH 300
  301 AIIHLIEDHA KRAQIPLRFA ASKVAEGDEE ILKALNLNQN ELELLDHIIQ QMEDERGLDH 360
  361 GAAIADMRFK FIKEVCDATV VKPKESKEYA RSVAIDNVLT GKYTAIPAFV GIMSLVFWLT 420
  421 FGVIGTWLAD GLDLGITWLS ELVDMGLTAY GINPVVHSLI IDGIFAGVGS VLSFLPIIVT 480
  481 LFFFLSILED SGYMARVAFV MDKLLRKIGL SGRSIVPMLI GFGCSVPGVM ASRTLPSERD 540
  541 RKMTILLTPF MSCSAKLPIY ALFTAAFFPR YGALVMIGLY FAGIVTGIVF ALLLKGTMFK 600
  601 GEPVPFVMEL PNYRMPGFKN VWQLLWDKAK DFITRAFTVI FVATIIIWFL QYFDPRLNVV 660
  661 SDSQDSLLAL VSGIIAPIFV PLGFGDWRIS TALITGFMAK ESVVSTLTVL LGGSTASLGS 720
  721 MFTPFSAIVF LVFTLLYTPC VAAIASVRRE LGGKWAVGVA VMQCVIAWVV ALCVHLLGIM 780
  781 MGWV