YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134052234, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	40	0.87
Non-Cytoplasmic	41	53	0.87
Transmembrane Helix	54	75	0.94
Cytoplasmic	76	83	0.92
Transmembrane Helix	84	106	0.92
Non-Cytoplasmic	107	118	0.79
Transmembrane Helix	119	140	0.86
Cytoplasmic	141	148	0.90
Transmembrane Helix	149	173	0.76
Non-Cytoplasmic	174	177	0.56
Transmembrane Helix	178	197	0.95
Cytoplasmic	198	225	0.97
Transmembrane Helix	226	248	0.93
Non-Cytoplasmic	249	261	0.88
Transmembrane Helix	262	283	0.90
Cytoplasmic	284	290	0.87
Transmembrane Helix	291	313	0.88
Non-Cytoplasmic	314	317	0.85
Transmembrane Helix	318	341	0.91
Cytoplasmic	342	352	0.89
Transmembrane Helix	353	375	0.87
Non-Cytoplasmic	376	381	0.90
Transmembrane Helix	382	402	0.94
Cytoplasmic	403	474	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAASTDIQ ENKVNKYTLA ALAGVPLIMV LGNSMLIPVL PQMAKSLNVS QMQISLIITL  60
   61 FSVPAGLVIP FAGFLSDRFG RKKIIIPGLF LYGLGGLLAG AAALIFKENA FPWILGGRIL 120
  121 QGIGAAGTAP IAMAFCGDLW KGKERAKSLG VIEASNGLGK VASPILGALI GLIAWWYIFF 180
  181 FFPVVIAVVI LGVWFICKEP ETNKQPKKVN EYVGSIKNIF KKKSPLLLTS FFAGSAALLI 240
  241 LFGVLFFLSD YLEKKFGLDG VIKGAALAIP VLFMSTTSYV TGALIKKKIK LMKWLVVIGH 300
  301 GLIGASLVTL PLFNNVYIFF AGISVAGIGT GLVLPCLNTL ITSSTNKDER GLVTSLYGSV 360
  361 RFLGVAAGPP LFGWLVEKGS DMMFWASASL AVISAVLAFF FIKVKAIQTS QGNNYDSSKQ 420
  421 KQSKQTLIMP VKQPFIAYKS LAWHPESNLI VRKPMPQMKK ERINEVGQVN TGES