YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88946534, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGTIVNAAA IIAGTALGLM FRKGISESIN NTVMSGIGLA VALIGFKMAL KTENELIVIL  60
   61 SLVLGGIMGE LLNIEGWLAR TGTYLESRVG GNGQGEVAKA FVTTSLIYCV GAMGIMGALE 120
  121 DGITGNATTL YAKSLLDGTT AVVFTTTMGF GVVFSAIPVF IYQGAITLAA SGIKEFLTPS 180
  181 MINEMTATGG LLIVGIASNI LGIKPVKVGN LLPAILMALF FTWLWANLNI GL

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.47
Transmembrane Helix	5	21	0.63
Cytoplasmic	22	28	0.58
Transmembrane Helix	29	50	0.85
Non-Cytoplasmic	51	55	0.67
Transmembrane Helix	56	79	0.88
Cytoplasmic	80	96	0.69
Transmembrane Helix	97	119	0.84
Non-Cytoplasmic	120	139	0.62
Transmembrane Helix	140	166	0.80
Cytoplasmic	167	180	0.56
Transmembrane Helix	181	203	0.83
Non-Cytoplasmic	204	207	0.55
Transmembrane Helix	208	229	0.86
Cytoplasmic	230	232	0.51