YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88924243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNNIVTKL WVIMTILVLV VIGIAGAVQT SFMEGLYYEQ QARQFKALGN KVAEIARLEQ  60
   61 DPVALDNKAA LIAELYNANV MILNKKGIVM QCQGMGMSTK NMPMDMNNPH HGPMSMEDIE 120
  121 RLYQGQAVVH KGNNPFFKTD VLSVGIPFKD HDNVNRAVII HAPLEPLASE LKHLQMLIIY 180
  181 TAVGGIILAA LLSLVFSRII SRPLVKMNKV ALEMASGNYQ HRVDIRSKDE IGLLSDSLNT 240
  241 LSSRLQEKIT QLEAQEQIRR EFVSNVAHEI KTPLAIMQGF TETMLDGLVK DEKERETYLG 300
  301 NILDEINRLK RLVNEILDLK RMEEGHFDFD KEPCDLKVLI YRVLGKLNQL VEQKGVNLKL 360
  361 NLEKRLLPVT CNSDRMERVL INLIDNAVRH TPEGGKIFIY VTSKANQVHI RIRDTGVGIS 420
  421 PEDLPMIWER FYKADKSRSR TQGGTGLGLA IVKKIVEAHG GQIYVESKLN EGTSFNIVLP 480
  481 VNQCSVA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.58
Transmembrane Helix	10	28	0.75
Non-Cytoplasmic	29	175	0.85
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	487	0.83