YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134051242, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	48	0.88
Transmembrane Helix	49	68	0.91
Cytoplasmic	69	73	0.89
Transmembrane Helix	74	95	0.91
Non-Cytoplasmic	96	111	0.79
Transmembrane Helix	112	131	0.90
Cytoplasmic	132	143	0.89
Transmembrane Helix	144	176	0.71
Non-Cytoplasmic	177	184	0.71
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	225	0.89
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	272	0.82
Transmembrane Helix	273	290	0.95
Cytoplasmic	291	302	0.79
Transmembrane Helix	303	322	0.93
Non-Cytoplasmic	323	338	0.78
Transmembrane Helix	339	360	0.92
Cytoplasmic	361	367	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRKRPPDF VLFLTVLMLL AVGLVMVFSS SEYVTMVRYG DSFYFFKRQL LWALLGLVGM  60
   61 FFMMHFDYYR LKRWIGPIVC LGFFLLVAVL IPGIGQVVNG SRRWIDLGFM NFSPAELVKI 120
  121 CLIMFVAFGL SKKGEKVEDF KDGLLPYLIV MGMAALLILL QPDLGTAIVL CGTIFVMFFA 180
  181 AGAKLSHLGG LMGFGVLGVC AAIYLEPYRM KRFLAFLDPE ADPQGTGYHI IQSLYALGSG 240
  241 GLFGMGLGQS KQKFLYLPEN HTDFIYAILG EELGFIGASL VVLLFIMFVW RGLKIAVTSP 300
  301 DPFASLLATG ITCGIALQAL INMGVVTGSM PVTGVPLPFI SYGGTSLLFT LMGIGIVLNI 360
  361 SKYTTPR