YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148259737, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFSDIPQI LQDLRRRGTQ VASEKRRGMS ATGWPVTVSV VVPFHNEAEN VVPLFDRLAA  60
   61 VLDGLDEDWE LVCVNDGSRD ATLAALQRIA ARDGRVRVID LSRNFGKEAA LTAGLDHARG 120
  121 AVAIPLDADL QDPPEVIPAL LAKWREGYDV VNATRASREG DGAVKRFTAH MFYRVMNRLS 180
  181 DVPIPRDTGD FRLIARPALE ALKRLPERRR FMKGLFAWIG FRTATITYHR APRHAGRTTW 240
  241 NYWKLWNFAL EGVTSFSSAP LRLASYLGFA VSVFAFVYAA VTIFRKLAYG NPVQGYPSLL 300
  301 VAILFLGGVQ LIALGMIGEY LGRLYEESKQ RPLYIVREIS GGSAPDL

Type	Start	End	Confidence
Cytoplasmic	1	213	0.79
Transmembrane Helix	214	231	0.54
Non-Cytoplasmic	232	262	0.57
Transmembrane Helix	263	284	0.90
Cytoplasmic	285	294	0.52
Transmembrane Helix	295	318	0.85
Non-Cytoplasmic	319	347	0.59