YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134052991, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQAQTSAPV PQPAEQTYSP LADFWHRLRK NKLAMVSLIF LLTLTFVAIF APFVAPYDPY  60
   61 LSEMPKALHG PSAQHWLGND ELGRDILSRI IYGAGVSLRV GLIAVCIALS VGMVVGSAAG 120
  121 YYGGRLDNII MRFMDIMLAF PSILLAIALM AVLGRGVENA IIAIGIVSIP EYARIIRGSV 180
  181 LSVKENEYVQ AARAIGNNDF QIIFKHIMPN VMAPVIVRAT LGISTAILET SALGFLGLGV 240
  241 APPFAEWGTM LGSGRGYMYN APHLVFFPGI AITLTVMAFN LLGDGLRDAL DPRLRR

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	55	0.94
Non-Cytoplasmic	56	99	0.94
Transmembrane Helix	100	122	0.92
Cytoplasmic	123	132	0.78
Transmembrane Helix	133	153	0.91
Non-Cytoplasmic	154	159	0.71
Transmembrane Helix	160	176	0.79
Cytoplasmic	177	214	0.81
Transmembrane Helix	215	241	0.78
Non-Cytoplasmic	242	262	0.80
Transmembrane Helix	263	283	0.93
Cytoplasmic	284	296	0.88