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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88945124, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQTQVTEK NNLATCTIPV TGMTCAACSA RVERGLKKLQ GVAGANVNLA IEKATISFDS  60
   61 NQTKVEDIIT KIQTLGYDVP VETLELVISG MTCAACSARV EKRLNALPGV QEAAVNLATN 120
  121 KATVKYISGL IHATEIRKTV EKLGYKAQRA NDLSQDQEGK ARQKEIRYQI LKFVLATVLS 180
  181 LPLAWMMVTE VLGWHQFMID PWIQLALATP VQFYAGWTFY RGAYYALKSG GANMDVLVVL 240
  241 GTSVAYFYSL IAVLQGWKTL YFESAAIVIT LILLGKILEA IAKGKTSEAI KKLMGLQPKT 300
  301 ARVVRDGEEV DTPIDEVEVG DTILVRPGER IPVDGVVLNG LSNVDESMLT GESIPVEKGP 360
  361 GDEVVGASVN KQGSFTFRAT KVGKDTALAQ IIRMVEVAQG SKAPIQRLAD RVSGIFVPVV 420
  421 IVIAALTFLG WYSTGATITE ALIHMTTVLV IACPCALGLA TPTAIMVGTG VGAEKGILIK 480
  481 GGEYLERAGR LDTIVLDKTG TITKGEPSLT NLFVLAPFQE NEVLQAVASG EKKSEHPLGQ 540
  541 AIIQEADERK LPLMETAEFE ALPGKGIRFK LDNNLWYIGN EALAHSLHID LSPVRAEKDK 600
  601 WEEDGKTVMI AVAGDDLAGL VAVADAVKEN AREAIAELKE MGLEVYMLTG DQRRTALAIA 660
  661 KQVGIDHVIA EVLPAHKAKE VENLKGIGKV VAMVGDGIND APALATADVG MAIGTGTDVA 720
  721 IESAAITLMR GDLRAIAAGI RLSRQTLRKI RQNLFWAFIY NVIGIPLAVF GLLTPVMGGA 780
  781 AMAFSSVSVV TNSLLLKRYN PSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle