YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146401676, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIATASRRA QPFSLPKPGH RAVGRMAVPP LKETIFARRP CSQNPRATSH ETPPCTRDGN  60
   61 PAALTSNVNP CSFSSAIIRS FRNCINSTCT SSRLESNRCF ACSDPTFPPR ATKCRAAKFR 120
  121 SQSETSPDRA ASAVAPVIIP LPDFPEISSN SAMMSNRRGP FRRRRGLTAP RFASIIGGMN 180
  181 ELKSYFLLAI AIACEVAGTS FLKASDGFTL PVQTIGTLMF YAAAFYLLAI IVRTMPIGVV 240
  241 YAIWSGAGIV LISAVGWLRF GQSLSPATMF GIAVIAAGVV IVNLSSAAPP H

Type	Start	End	Confidence
Cytoplasmic	1	181	0.92
Transmembrane Helix	182	202	0.77
Non-Cytoplasmic	203	209	0.74
Transmembrane Helix	210	230	0.92
Cytoplasmic	231	237	0.73
Transmembrane Helix	238	258	0.93
Non-Cytoplasmic	259	266	0.67
Transmembrane Helix	267	287	0.93
Cytoplasmic	288	291	0.80