YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88940623, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDETETPQ DADPINDKEM PLLDHLAELR RRLLWSGLAF LAAFLVSYYY AQPIYHFLAQ  60
   61 PLVNILKERG QKPELVYTAL YEAFFTYVKV AIFAAAFISF PVIATQIWLF IAPGLYRSEK 120
  121 RALLPFLIAT PVLFFAGGAL AYYVIFPNAW KFFLSFQTNP HNANFQINVL PRVSDYLNLV 180
  181 MKLIFAFGIC FELPVLLTLL GRVGIVNAAA LKKYRRYAYV GCFIVAAILT PPDVFTMTGL 240
  241 ALPLIALFEL SIFAVKMVEP KAEVSENA

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	52	0.95
Non-Cytoplasmic	53	89	0.94
Transmembrane Helix	90	112	0.91
Cytoplasmic	113	122	0.90
Transmembrane Helix	123	146	0.93
Non-Cytoplasmic	147	182	0.96
Transmembrane Helix	183	206	0.88
Cytoplasmic	207	216	0.86
Transmembrane Helix	217	235	0.85
Non-Cytoplasmic	236	236	0.46
Transmembrane Helix	237	258	0.59
Cytoplasmic	259	268	0.55