YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88915280, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATIIGLV LGFGAVIGGQ VLEGGHVSAI LQPTAALIVL GGTFGATFVS FPLKNILQAL  60
   61 KDSRKVLFPP KEDPEGVIKN IINYAAKARR NGLISLEQEA QTVKDSFTKK GISLVVDGID 120
  121 PQKLRETMEI ELASFEEHAK ASAEVFEAAG GFAPTIGIIG AVLGLIHVMN NLSDSSKLGA 180
  181 GIAVAFVATI YGLMTANIIC IPISTKLKLR LKEAILQKEM VIEGLIAIQN GENPHFIEQK 240
  241 LRAYMPDDGE GAKKGK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.82
Transmembrane Helix	6	24	0.89
Non-Cytoplasmic	25	33	0.62
Transmembrane Helix	34	53	0.93
Cytoplasmic	54	147	0.97
Transmembrane Helix	148	169	0.92
Non-Cytoplasmic	170	178	0.90
Transmembrane Helix	179	201	0.92
Cytoplasmic	202	256	0.97