YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148265205, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQQAKLFN RIAAVTDLVT VLAAFVMAYH ARKLAGGLSE LRDYLWILLF AIPTWYFLMA  60
   61 HFGLYASMRT RPLGQILASL MKVNAIGGIV ISSVIYFIEP HGLSRGLIGS FLVFSFFLLS 120
  121 LDKIALKLCL AYIRRQGYNT RNILIVGTDD KARCFCELVG QHDDWGLKVA GVLELADESE 180
  181 IGALAAPNLL GQLDDLVEVC KENTVDEVVF CVSRQTLPDM EDYLRELEEM GITVRMVLDF 240
  241 YDAPRSRTEL SLFHDAVPML TFYCKAFDTD QLFLKRCLDI IGAVVGLLAT AILFPFIAVA 300
  301 IKINSKGPFF FGQQRVGESG RTFKCWKFRS MYLDAEARKN ELMHLNEMNG AIFKIKDDPR 360
  361 ITRVGKFIRK TSLDELPQFW NVLRGEMSLV GTRPPTPDEV ANYQNWHRKR ICIKPGITGL 420
  421 WQVSGRNQIQ DFDEVVRLDL EYIDRWTLWL DIKILLKTFW VVFARSGSC

Type	Start	End	Confidence
Cytoplasmic	1	7	0.98
Transmembrane Helix	8	31	0.86
Non-Cytoplasmic	32	43	0.94
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	77	0.82
Transmembrane Helix	78	98	0.92
Non-Cytoplasmic	99	105	0.79
Transmembrane Helix	106	126	0.92
Cytoplasmic	127	279	0.99
Transmembrane Helix	280	301	0.93
Non-Cytoplasmic	302	469	0.98