YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146398392, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSYLRRFW VTFSAYVIGF YASTINRFRI KGSDNIPSSG AVLLVSNHIS AYETIFLPWA  60
   61 VIRQHPMQML WAPAKEELFT SSFQRWLYSS WGAFPVKRGR DVRAGKAIND LLKDQKVMLF 120
  121 PEGTRHKDGV LGKGNRGVGK IIYDTRPVVV PTALVGLNRW KFPGFGQDAC VVFGKPLDFS 180
  181 DLYELSDCKE THQMIVDRVM AAIADLLKTE GAYINEG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	25	0.83
Non-Cytoplasmic	26	40	0.75
Transmembrane Helix	41	62	0.51
Cytoplasmic	63	217	0.54