YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88936328, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSLLFNVT TVSYLLATVV FFAYLASKNR ILGLMGSIAA YSGFVVQTVA IGLRWRESYL  60
   61 IGHGHAPLSN LYESVVFFSW TIILIFALLD LRYKYRVIGA FVVPFALMGM AWAQLGLSSG 120
  121 IEPLVPALQS NWLLYHVITS FLGYAAFAVA CGISIMYLIK ARQKSGEVSG QTDSIVGAFP 180
  181 VARVLDDLNY KAIMIGFPLL TLGIVTGAAW ANYAWGTYWS WDPKETWSLI VWFVYAAFLH 240
  241 ARITKGWVGK KAAILSIVGF AATIFCYLGV NLILSGLHSY GGRM

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.82
Transmembrane Helix	6	25	0.91
Cytoplasmic	26	31	0.80
Transmembrane Helix	32	53	0.88
Non-Cytoplasmic	54	69	0.86
Transmembrane Helix	70	89	0.91
Cytoplasmic	90	96	0.81
Transmembrane Helix	97	116	0.93
Non-Cytoplasmic	117	133	0.88
Transmembrane Helix	134	159	0.86
Cytoplasmic	160	191	0.96
Transmembrane Helix	192	214	0.88
Non-Cytoplasmic	215	225	0.87
Transmembrane Helix	226	244	0.91
Cytoplasmic	245	252	0.85
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	284	0.82