YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148263840, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTRFIDSA NCAIEGILYT ARTQKHMRNH FLAALVLLIA TLFLRVSALE FILLALSVSF  60
   61 VLFAELMNTA VEVVVDLVSP GYHPLARIAK DTAAGAVLVA AIGTAVMGYL ILSRYIFPIY 120
  121 KEVLGMIGTP TEMGTLVSIL MVVIVVIILK ARSGKGTPLQ GGLPSGHAAV AFSIATSVSL 180
  181 NTQDPMISLL TIALAIMVSH SRLLLNIHSM REVVFGALTG TGITLAMLLL FRFAG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	49	0.89
Non-Cytoplasmic	50	51	0.56
Transmembrane Helix	52	78	0.70
Cytoplasmic	79	91	0.72
Transmembrane Helix	92	113	0.91
Non-Cytoplasmic	114	128	0.72
Transmembrane Helix	129	149	0.90
Cytoplasmic	150	158	0.71
Transmembrane Helix	159	179	0.82
Non-Cytoplasmic	180	185	0.75
Transmembrane Helix	186	205	0.91
Cytoplasmic	206	212	0.84
Transmembrane Helix	213	234	0.92
Non-Cytoplasmic	235	235	0.92