YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88935565, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKFLPLVIA LSLLAGGCGF GWYWLSTGRF MEKTDNAYIR SEITQVSSKV SGYVKDVPAE  60
   61 DNTLVAAGDP LVRIEDLEFG VRLELGRKKL EERKAAQLVA YNRSRLQDSR IDACTAQLAA 120
  121 ARAEQLKKTG DLRRFGSLFP DGIVSELDYD AVVTAEKKAR AETGSAVANL KMAESELAAL 180
  181 LAEERRLEAE LHQQEEELKL LAKELADTVV RSPITGEVGN RRVRAGQYVK PGTVLLTVIP 240
  241 RNVLWVEANF KEVQLSRMHE GQPVSIEVDA FPGRPLTGRV ESLSPASGAE YSVLPPENAT 300
  301 GNFTKIVQRV PVKIRFQPGQ PLLRELRAGM SVVVSLDTRP GSGSGPAVSR LNRR

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	354	0.99