YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148262464, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	27	0.94
Non-Cytoplasmic	28	43	0.85
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	77	0.90
Transmembrane Helix	78	99	0.92
Non-Cytoplasmic	100	149	0.96
Transmembrane Helix	150	169	0.93
Cytoplasmic	170	183	0.80
Transmembrane Helix	184	206	0.90
Non-Cytoplasmic	207	223	0.82
Transmembrane Helix	224	247	0.90
Cytoplasmic	248	282	0.93
Transmembrane Helix	283	302	0.51
Non-Cytoplasmic	303	305	0.42
Transmembrane Helix	306	325	0.55
Cytoplasmic	326	329	0.45
Transmembrane Helix	330	348	0.59
Non-Cytoplasmic	349	351	0.52
Transmembrane Helix	352	375	0.85
Cytoplasmic	376	437	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKFYQHLY FQVLLAITVG MLLGNFYPET GVAMKPLGDG FIKLIKMIIA PIIFCTVVTG  60
   61 IAGMEDMKKV GRVGAKALLY FEVVTTFALG IGLLVVSVIE PGVGFNANVA TLDTKALNAY 120
  121 TSAAKSHGVT DFLLNIIPSS VVDAFAKGDI LQVLLFAVMF GFALSALGAR GKGIYRFIDQ 180
  181 LSHVLFGIVG VIMKAAPIGA FGAMAFTIGK FGIGSLSQLG LLMGSFYLTC LLFVFVVLGT 240
  241 IARICGFNIF KFIRYIREEL LIVLGTSSSE SALPRMMAKL EKLGCTKSVV GLVIPTGYSF 300
  301 NLDGTSIYLT MAAIFVAQAT NTHLTWTQKL TILFVLLLTS KGAAGVTGSG FVTLAATFAA 360
  361 IPTIPVAGLA LILGIDRFMS EARALTNLVG NGIATVVVSK WENELNEEQM QRVLNGEVED 420
  421 VADDEEPVFD DAEPVAD