YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88930791, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDAVLFTLA ALLVVFAGAC AMADSALSRV PRVHVEEFTR DGRRGAKSLA KVINDASHYL  60
   61 NLVLLLRVTA EMTAAVIVAV AAVRIFGLHW PVVVVVSLVM VVVSYVVIGV APRTIGRQHA 120
  121 DGVSLAVAPV VYGLARVLGP LPRLLIAFGN AITPGRGFRE GPFTTEAELR DLVDLAEKAR 180
  181 VIEHGERQMI HSVFELGDTL VREVMVPRTD IVFIEKTKTL RQAMSLALRS GFSRIPVVGE 240
  241 NEDDVVGIVY LRDLAKRIYE YREAETLERV ESIMRPPVFV PDSKPIDELL REMQAARNHV 300
  301 AIVVDEYGGT AGLVTIEDIL EEIVGEITDE YDLERPRVEP LEDGTVRVTA RLSIDELEEL 360
  361 FGVQIDRTDH EVETVGGLLA QVLGRVPIPG ARAAVAGLEL IAEGAAGRRN KIATVLVRRL 420
  421 PEAPEAAAET EHTAAAEPAD APGRGPSRAD GGDPAVPSQP AENGAHDAGT PVAAAPRGDG 480
  481 VRR

Type	Start	End	Confidence
Signal Peptide	1	23	0.83
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	67	0.82
Transmembrane Helix	68	83	0.47
Cytoplasmic	84	87	0.23
Transmembrane Helix	88	111	0.61
Non-Cytoplasmic	112	483	0.76