YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PBN1_ASPFU
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRITFVQR PESPFHVDQA VLTSDALSIT HLDAAREERA TFGFDELPAE IWQVLKSSHE  60
   61 LHIRWATERP YEIGAPFSSR ISPGLHVYYT PGTARETGVG LCSLLKTVFD ESLECQSLRY 120
  121 YSRLPSLQNL VAFIQHKFCD RSDEKCVHHA ESILSADSVD VNYDSISHAL TVSGYWSTSP 180
  181 GQGWTEQIRK HAADTHQVEV GLLGVESATE PEELKMEPTL FSFPSRHHPL PADATYTVSF 240
  241 PAPTGLHPTL TISMPRASLR RPPAPPDATC ALHTYLTLPS WIFGDKYQLS TTDRLFLSSH 300
  301 NLAALRAVAG ETDLEAPDWV VSRWGSNWLL ELATPLRPDT SPEEWNASIP LHLRYLTPSE 360
  361 SGYRSAAVPW PIVFWACTAE DGTKMGVNPF DRVNLGWEGL FGARTMFYQL HPAPAEGKDR 420
  421 LVEELDVPVL RLREDAGFFQ SKTIELGTVV VVGLGLLWVL WKLGLVLWIA GTGRSTRAQK 480
  481 RTDKHRKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	447	0.97
Transmembrane Helix	448	471	0.89
Cytoplasmic	472	489	0.93