YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88860103, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQFIKSKA AIAWGPNQPL SIEEVDVMYP KAGEVLVKII ATGVCHTDAF TLSGQDPEGV  60
   61 FPAIMGHEGA GIVHAIGEGV TSVAIGDHVI PLYTPECGEC KFCTSGKTNL CQKIRATQGK 120
  121 GLMPDGTTRF YKDGQPIFHY MGTSTFSEYT VLPEISLAKV NKTAPLEEIC LLGCGVTTGM 180
  181 GAVMNTAKVK AGDTVAIFGL GGIGLSAIIG AQMAGASQII GVDINPSKFE LAKKLGATLC 240
  241 INPKDYDKPI QEVIVELTDG GVDFSFECIG NVDVMRSALE CCHKGWGESV IIGVAGAGQE 300
  301 ISTRPFQLVT GRVWRGSAFG GVKGRSELPH IVERYLAGEF KLDDFITHTM ALEQINEAFD 360
  361 LMHSGESIRS VIHFDHK

Type	Start	End	Confidence
Cytoplasmic	1	193	0.57
Transmembrane Helix	194	216	0.60
Non-Cytoplasmic	217	377	0.80