YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88818028, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVTFYGIGY VGLVQATVLA DAGHDVCCVD INETRIANLK KGIIPIYEPG LTPLVEKNFA  60
   61 EGRLTFTTDA EFGVNFGDLQ FIAVGTPPDE DGSADLQYVL KVAETIATHM TSPKVIIDKS 120
  121 TVPVGTADKV RAKAQQVLDS RGSDLTFAVV SNPEFLKEGA AVNDCKRPDR IVIGTDSADA 180
  181 EELMRELYAP FNRNHEKIIV MDIKSAELTK YAANCMLATK ISFMNEMANI AERVGADIEH 240
  241 VRQGIGSDSR IGFQFIYPGC GYGGSCFPKD VQALVRTADG IGYESQILKA VEAVNYAQKN 300
  301 KLFEYITKHF GKDLSGKTFA LWGLSFKPNT DDMREAPSRV LMEQLWAAGA KVQAYDPEAM 360
  361 EETQRIYGSR PDLSLMGTKE SALNGADALI ICTEWQNFRA PDFDLIKSQL NEAVVFDGRN 420
  421 LFEPTRMTKK AIKYYSIGRG LSVTGE

Type	Start	End	Confidence
Signal Peptide	1	20	0.55
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	446	0.99