YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88858906, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAWNEPGN NGNDKDPWKN KGGKEQGPPN LDEVFRKYGD KFNGMFGGST KSGNSNGGLS  60
   61 GAAFGFVLII AIVVWALSGI YTVKEAERGV ILRFGQFHDI ALPGLRWKMT FVDRIVPVDV 120
  121 EAVRSLSASG FMLTEDENVV SVEFVVQYRV TDPRNYLFSV TDADHSLQQS LDSALRYVVG 180
  181 HARMDQILTR GREVIRQQTW EELNKIIEPY NLGLVLTDVN FKDARPPLEV KDAFDDAIAA 240
  241 QEDEQRFIRE AEAYEREIEP RARGQVTRMT QEAEGYKERV TLEAQGEIAR FEKLLPQYQA 300
  301 AKEVTRKRLY IEAMESVLSN SSKVLIDVKG GNNMMYLPLD KIMQQTQGAT SNTPMQLPNS 360
  361 TTDIQNLRTQ MNNTVGNSQV NSATDRLKGD RYSNGR

Type	Start	End	Confidence
Cytoplasmic	1	57	0.61
Transmembrane Helix	58	83	0.81
Non-Cytoplasmic	84	396	0.66