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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88819918, gi|...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.26
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSKLSIKL LWYVTPLVIV PLLFLGGFAL SNVTQFTERQ AELSVSQFVD QQQQKISNYT  60
   61 EVFHSTTELL SNSPVLIDFL EAYNNKPASK TVNPGSLLDV FVSYINAYPD ILSIDLITPE 120
  121 GKSIAFYSSD LFATSDSYHF TENLRNSSIR RQQFMHQNEQ GSTSLYFAQQ IFKSDYQLES 180
  181 PKLMAYLIVH LDPSVLNTSI LEAPFENTLN IVLNEQGKIL FSSNIETLGH YLTEFEYKSI 240
  241 VDAAERSHLV ELKLSTLDNQ ERMVYANQMN GGAYYVSSIP KNILYESGKA ITLFTALVVI 300
  301 ASIIFLPILI FIVVRSLLLT PLEMLAEASH RVGDGDLKIL LPIEREDEMG SLFQDFNHMV 360
  361 SQIRHYQGQL EDYKEHLEEK VAARTHELAK MNHQLEKAMN QAEQASQLKS RFLANMSHEI 420
  421 RTPLTAIMGF TEQMLTKEPD DKKAQHLNTV LRNSKHLLEL INNILDLSKI EAEKLEVERQ 480
  481 PLELSQLIED INSVVHVLAQ DKNLTFAVEY DYPLPRTLNS DITRLKQVLL NVCTNAVKFT 540
  541 AEGSVTLAIS AKHSLSQLEF KVQDTGIGMS NQELERIFKP FEQADSSTTR KFGGTGLGLC 600
  601 ISKNLAQLLG GDITVTSKQT QGSCFLITVA CHNEHIPVDI IKSATDLAQL KPALAPIKNA 660
  661 YYQAQILVAE DNPDNQELIR LLLEQWGLEP HFADNGAQAV EMALTHDFDL ILMDMQMPVM 720
  721 GGLEATTMLR NTAYDGPIIA LTANVMKNDI DTYIAAGCNQ SLAKPIDKQE LENALEKYLS 780
  781 LQHDNNKKWE DVLKTEQFKK ISLNYKAKMP EMKTQLTDLY ESEDWEQLTA LAHSIKGSAG 840
  841 CFGFTHISDA ASELESCLKD KNQQRLDYQF LKLEQSISFT LQMD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle