YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88858077, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQYSYRQI FSAVYKKDLR LAFRQRSEII NPLLFLTIVI SLFPLGVGPE PALLSRMAPG  60
   61 IIWVAALLAT MLSLDKLFRD DYLDGSLEQL LVSPYPMSLI VSAKIAAHWT TTGLPLVLFS 120
  121 PLFALLLNLE SQAWQATIVT LLIGTPLLSL IGAIGAGLTV GLQKGGILLS LLVLPLYIPV 180
  181 LIFATSAIDT AAMSLAYSGQ LAILGAMVAA AIVLAPIAVS SALKVSVS

Type	Start	End	Confidence
Cytoplasmic	1	28	0.96
Transmembrane Helix	29	48	0.93
Non-Cytoplasmic	49	54	0.74
Transmembrane Helix	55	74	0.87
Cytoplasmic	75	104	0.85
Transmembrane Helix	105	127	0.85
Non-Cytoplasmic	128	135	0.77
Transmembrane Helix	136	158	0.91
Cytoplasmic	159	166	0.70
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	200	0.67
Transmembrane Helix	201	223	0.88
Cytoplasmic	224	228	0.82