YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108884721, gi...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANGVTMPT VAFDFDFFFD TWLWLAPLLV VSPFRVGAYL PQLATLLRVT TTKRTSVKVC  60
   61 VWPLPAFIAC RRRTFFPSTF ANMPPKKDTK GAAKQPQKTQ KKKEGSGGGK AKKKKWSKGK 120
  121 VRDKLNNQVL FDKATYEKLY KEVPAYKLIT PSVVSERLKI RGSLAKRGLR ELCQKGLIRM 180
  181 VVHHHAQVIY TRTTKGDDPV A

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.83
Transmembrane Helix	21	39	0.76
Cytoplasmic	40	201	0.61