YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88803984, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKPLHSART ISWMCLAVLS LFCSHSLTAQ EQIGRPMINN YNYQDYQGAP INWWALEDDQ  60
   61 GNMYFANQFQ LLQYDGVNWK GIETESGCRS LAKGEDGTIY VGGTGSLGYI SATENGTYEY 120
  121 VSMVKQLPEE HQAFEDVWFV DSFKGRIYFW TEYKVFIWDG TRMKVLVSEH RLHVSAIVDD 180
  181 TYYIRIWDVG LSVLNDQDEF ELLPNGEKFA GERIYSILKY DDERILLGTR TQGFFLYDGK 240
  241 DFTPFKTEID DIMDGEIYLP GLALDDGRFV INSNNVGAYL LSHEGELLQK YTSETGLQEG 300
  301 SVLNLYLDSR GVLWLPLFNG ISNVNLNSSF TTLDSNMGIN TTVFEVVRHQ GVLYMSSNGG 360
  361 ILYLDESDMT VRPIEGTYGQ GGNFLTFRDR LYVATNGMGL IEIIGTKFRD VRRDQNYDFR 420
  421 AQYLWQSTFD PNRIFVTYNT GLKTFFYNET TRQLEEESTT TKFIAGTGNI IEEPDGSLWL 480
  481 DTTSDGEVLK VIPDISNGAM NLDNSELIYY GPEQGLPDSG LGLYEIFDEK VIFSGEVEAT 540
  541 FGYNASTDRF EEKEFFFEEY IDWDRPGSQG FTSEDGKHWF NSGAGIMIAE KKADGKISVN 600
  601 TDTFRELKNN RIFTIYPEEP DAEGNWVVWF SGPGGVIRYQ GQLDKPSIPE FQVNVRSITM 660
  661 SGDSLLYAGN IAYPGDLEID YENNSMTFGY AAPLFIGQKD MKYSTWLTGL DDDWSDWTAQ 720
  721 TSREYINLPP GSYTFKVRAQ NVYGDISEEA SVPFSIDYPW YRSWWAYALY LIGFLAIIWM 780
  781 AVKARTGILL NQQKVLEDRV EERTREVQQR LNELATVNSV SQALNDKLEL NALIQLVGKK 840
  841 MKDVFNSDIT YLAILDEETN VINFVYQDGD EMPPMQLGEG LTSRIIQSGE PLLINRDTDI 900
  901 MAEYNKHGIK QTGKQAISYL GVPIPVEDKI IGVLSVQSTK QASRFTQEDK KLLTTIAINV 960
  961 GVALHNADLY EQAREAKARA EDANEAKSAF LSTVSHELRT PLTSVLGFAK IIRKRLTEKI1020
 1021 FPAVTVDDQK IKRTMKQVSE NLDVVVSEGE RLTTLINDVL DLAKIESGRM DWNMKPIFLQ1080
 1081 DVIGRAVSAT SSLFEEKKLQ LKKNVPDDLP LINGDEDKLI QVVINLLSNA VKFTKKGSVT1140
 1141 IDAYREENQL IVEVQDTGIG IAEEDKHKIF ERFRQAGDTL TDKPQGTGLG LPICREIIEH1200
 1201 HGGIIWMKSE PGVGSTFFFS IPMMGEGSDQ PIQLERILKS LKKQIKHSSQ VKSQESATIL1260
 1261 VVDDDTPIRS LLRQELSDAG YQVKEAANGK AALDMVRISK PDLIILDVMM PEINGFDVAA1320
 1321 VLKNDPATMD IPIIILSIVQ DKERGLRIGV DRYLTKPIDT EKLFHEVDEL LEQGVSHKRV1380
 1381 LVVDEDTSTV KSLSDMLSAR GYKVMEANPD SLMDMAFEVK PDIIMLKSIR NGDEKSLKEL1440
 1441 KLKAGMENVM FFVYQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle