YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88784801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	62	0.92
Non-Cytoplasmic	63	82	0.91
Transmembrane Helix	83	103	0.96
Cytoplasmic	104	116	0.86
Transmembrane Helix	117	140	0.81
Non-Cytoplasmic	141	160	0.95
Transmembrane Helix	161	183	0.92
Cytoplasmic	184	222	0.96
Transmembrane Helix	223	243	0.94
Non-Cytoplasmic	244	258	0.87
Transmembrane Helix	259	281	0.90
Cytoplasmic	282	300	0.88
Transmembrane Helix	301	322	0.93
Non-Cytoplasmic	323	341	0.91
Transmembrane Helix	342	362	0.92
Cytoplasmic	363	368	0.89
Transmembrane Helix	369	391	0.88
Non-Cytoplasmic	392	410	0.90
Transmembrane Helix	411	432	0.92
Cytoplasmic	433	580	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHYEAPIR KPLVLGDKGY HDVSVDIAAP VEGRANKQWW IVFTIALAAF LWGIGCIIYT  60
   61 ISTGIGTWGL NRTVNWAWDI TNFVWWVGIG HAGTLISAVL LLFRQKWRMA INRSAEAMTI 120
  121 FSVVQAGLFP IIHMGRPWLA YWVVPIPNQF GSLWVNFNSP LLWDVFAIST YLSVSLVFWW 180
  181 TGLLPDFAMI RDRAVKPFQK KIYSLVSFGW SGRAKDWQRF EEVSLVLAGL ATPLVLSVHT 240
  241 IVSFDFATSV IPGWHTTIFP PYFVAGAIFS GFAMVQTLLI IMRKVCNLEA YITVQHIELM 300
  301 NIIIMITGSI VGCAYITELF IAWYSGVEYE QYAFLNRATG PYWWAYTLMM TCNVVSPQVM 360
  361 WFKKIRTSIL VSFIISIVVN IGMWFERFVI IVTSLHRDYL PSSWTMFSPT FVDIGIFIGT 420
  421 IGFFFVLFLL YARTFPVIAQ AEVKSILKSS GERYKKLRDA GKPLYEIRTA VPRTADQVPP 480
  481 AAQATTPPPA GDDPAQVSSL LDAVGAFDPV TQTPDNLKRI KGIGPQMEEK LNQIGIYTFA 540
  541 QVSRMTQREY DLLDSITGSF PGRAQRDDWA GQAKLLNEKQ