YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRET1_AEDAE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	340	0.90
Transmembrane Helix	341	363	0.85
Non-Cytoplasmic	364	389	0.86
Transmembrane Helix	390	410	0.92
Cytoplasmic	411	418	0.78
Transmembrane Helix	419	440	0.91
Non-Cytoplasmic	441	446	0.66
Transmembrane Helix	447	465	0.92
Cytoplasmic	466	474	0.83
Transmembrane Helix	475	495	0.93
Non-Cytoplasmic	496	501	0.78
Transmembrane Helix	502	521	0.93
Cytoplasmic	522	585	0.95
Transmembrane Helix	586	607	0.91
Non-Cytoplasmic	608	622	0.83
Transmembrane Helix	623	643	0.94
Cytoplasmic	644	650	0.90
Transmembrane Helix	651	672	0.93
Non-Cytoplasmic	673	684	0.88
Transmembrane Helix	685	707	0.89
Cytoplasmic	708	718	0.83
Transmembrane Helix	719	741	0.82
Non-Cytoplasmic	742	750	0.73
Transmembrane Helix	751	771	0.93
Cytoplasmic	772	806	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGNEMDDTR DPLQYGYQRV NTGEGSLSTS TTGTSLDTIV LDTNAEDLNS TPRVGAQRTF  60
   61 SPILETDDTN PFLDPPPPGQ KSPPAVGEAK AKSKSSLKGS RVSFDQEDRF DETDEGFRKQ 120
  121 REHFQKHKSH STSEHKNQLI KELRHLLAAD NRRQFQGKKH VSLDVQSSKV LEELLKASSS 180
  181 EDDFEGQRKQ FQERKHKSLD ARHISFKFEK EPTPSSSEED FEPSTSLLKI DADITKPVII 240
  241 DLKVNRAQSD QALTQFQKNL AHFQDLESSE DEDYISSRKH FQQAKSMSTD SRKSNKSIRF 300
  301 FEMEMGTKEE NIRTAVPFVR QITEDGKPKL EVYRPTTNPI FIWTQVLAAL SVSLGSMVVG 360
  361 FSSAYTSPAL VSMKDRNITS FEVTDQSGSW VGGIMPLAGL AGGILGGPLI EYLGRKNTIL 420
  421 ATATPFIISW LLIACATHVA MVLVGRALSG FSVGVASLSL PVYLGETVQP EVRGTLGLLP 480
  481 TAFGNIGILL CFVAGKYMDW SGLAFLGAAL PIPFLLLMFL IPETPRWYVS RGRDDRARKA 540
  541 LQWLRGKKAD VDPELKGIIK SHQDAERHAS QSAMLDLMKK ANLKPLLISL GLMFFQQLSG 600
  601 INAVIFYTVQ IFQDAGSTID ENLCTIIVGV VNFIATFIAT MLIDRLGRKM LLYISDVAMI 660
  661 ITLMTLGGFF YVKNSGQDVS QVGWLPLAAF VIYVLGFSLG FGPIPWLMMG EILPGKIRGS 720
  721 AASVATAFNW SCTFIVTKTF ADIINAIGTH GTFWMFGSIC VIGLAFVIFY VPETQGKSLE 780
  781 DIERKMMGRV RRMSSVANIK PLSFNM