YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88781661, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTQIILG AAVGEAVLGK KIGNKAMLYG AIAGTIPDLD VFSSFFTDTV TALETHRGFT  60
   61 HSIFFSVLFA PILAFIITRF EAYKNIKDWS WLFFWTFVTH PILDAQTTWG TQLFWPLDLR 120
  121 LAFKNIFVID PLYTLPFLVF LILAMRQKKG AKKRRFYNNL GLGISSAYLI LTLILKGFSY 180
  181 QKFTTALKLK NIDYRSMHTK PTPLNSILWS ANVDTENAYL IGFTSFLDSQ PIVFSSHPKN 240
  241 HELLGDLVHH PKMQRMIAIS KGWYTINKEE DQLYFNDLRF GTMSSSADAT NFVFKYKIEV 300
  301 TPNGTPFFIE VPKDKLEGIQ LLSDLWIRIK GN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.78
Transmembrane Helix	26	46	0.70
Non-Cytoplasmic	47	58	0.82
Transmembrane Helix	59	80	0.90
Cytoplasmic	81	88	0.87
Transmembrane Helix	89	109	0.86
Non-Cytoplasmic	110	125	0.81
Transmembrane Helix	126	145	0.94
Cytoplasmic	146	155	0.94
Transmembrane Helix	156	175	0.92
Non-Cytoplasmic	176	332	0.94