YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88800324, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWLTELETF INGFVAQGSE YRWIIQVFLI VLATLIINYF IRKTFDRLEI RANRTVGRFD  60
   61 NILIETARRP VRVFVWIGGI LMAADVVRNV SNEPIFDLID PIREVSFIVL FAWFAVRFIR 120
  121 HGESAVQREG VLENPMDATT ASALGKLLRL SVVITTALVV LQTLGFSISA ILAFGGVGGI 180
  181 AVGFAAKDIL ANFFGGLMIY LDQPFKVGDW IRSPDKEVEG VVENIGWRLS RIRTFDQRPL 240
  241 YVPNATFANI SVENPSRMRN RRIYEIVGLR YGDADKIEQV VADVKAMLQE HDEIDQDQTM 300
  301 IVNVNKFNSS SIDFFVYTFT KTVNWIRYHE VKQDIMVKII DIVERNGAEF AFPTQTLHLK 360
  361 NDEPVEIEG

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.97
Transmembrane Helix	21	41	0.94
Cytoplasmic	42	72	0.92
Transmembrane Helix	73	90	0.72
Non-Cytoplasmic	91	100	0.65
Transmembrane Helix	101	119	0.71
Cytoplasmic	120	149	0.86
Transmembrane Helix	150	177	0.78
Non-Cytoplasmic	178	179	0.41
Transmembrane Helix	180	201	0.65
Cytoplasmic	202	369	0.84