YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88777858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQITDSQKWL VLASLVLLFW LITLLSPILS PFLTALLLAY LGDPLVDKLE EWKLSRTQGV  60
   61 VVTFLVLALI FALAALLVIP ALIQQIDDLI KLVPQGVAWI KNEATPYLEQ RFDIDLYEFD 120
  121 WAWLSAKLDW GATGNVVRSV LANLTQSGLA MVSFIGNLVL IPVVTFYLLR DWDLLVERVG 180
  181 ALIPRYYIAN VSSLAQQCHE TLGAFFRGQL LVMLAQGIIY SIGLMAIGLD LGLLVGMLAG 240
  241 LASIVPYLGA IIGIGAGLFA AWFQFGDLLH LVLVLVVFGV GQTLEGTVLT PKLVGDRIGL 300
  301 HPVAVIFAVL AGGQLFGFVG ILLALPAAAV IMVLLRQVHS NYRLSSLYGS DPQEQTEGED 360
  361 YTAQDVYAES DDNTVDKQPS EPGTDDAEKD R

Type	Start	End	Confidence
Cytoplasmic	1	8	0.62
Transmembrane Helix	9	39	0.75
Non-Cytoplasmic	40	59	0.58
Transmembrane Helix	60	83	0.90
Cytoplasmic	84	146	0.60
Transmembrane Helix	147	169	0.86
Non-Cytoplasmic	170	209	0.56
Transmembrane Helix	210	234	0.80
Cytoplasmic	235	237	0.37
Transmembrane Helix	238	263	0.80
Non-Cytoplasmic	264	267	0.47
Transmembrane Helix	268	289	0.75
Cytoplasmic	290	297	0.36
Transmembrane Helix	298	313	0.56
Non-Cytoplasmic	314	314	0.20
Transmembrane Helix	315	335	0.85
Cytoplasmic	336	391	0.70