YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88778642, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRRIALIA GLAIVSYIMI LQWSNDYSQT NPVNTADAVI AGDLNSDNAV ASEVPTGNPD  60
   61 VANDTQAGQA PATSQVNGDV ISVRTDTLDV RISLDGGDVI YTALPEYPYS LETPNIPFRM 120
  121 FENNTTRTYI AQSGLVGEDG IDRQSRARFS AEQSTYELGD ADQLEVVLTH EADNGLVVNK 180
  181 VYTFNRGAYV MDVRFDLTNQ GSDTLRTNLF GQLRRDRSQD PSAGSGIGMR SYLGATFSTE 240
  241 DSAYEKVKFG ELDDGRFNGS KVGGWVAMLQ HYFLSAWIPS ANDNNAFYGQ KGSTGDYYVG 300
  301 FQAPTVVVGP GESVSTGAQL YVGPKDQDQL DELADNLEKT VDYGWLWWIA QPLFWLMQFI 360
  361 HGLIGNWGWS IVLMTLTVKM VLYPLTASSY RSMGKMRKFA PVISELREQY GDDRQKMSQE 420
  421 MMKLYQKEKL NPLGGCLPML VQMPVFIALY WVLMESVELR QSPFIFWIQD LSLKDPFFVL 480
  481 PLLMGASMFL QMRMQQQPTM DPMQQKIMQF MPVMFTFMFL WFPAGLTLYW FTNNVITIVQ 540
  541 QYIVNKNIER DEAKAKAKT

Type	Start	End	Confidence
Cytoplasmic	1	5	0.66
Transmembrane Helix	6	23	0.57
Non-Cytoplasmic	24	358	0.74
Transmembrane Helix	359	383	0.78
Cytoplasmic	384	429	0.94
Transmembrane Helix	430	453	0.90
Non-Cytoplasmic	454	472	0.92
Transmembrane Helix	473	492	0.91
Cytoplasmic	493	509	0.89
Transmembrane Helix	510	531	0.91
Non-Cytoplasmic	532	559	0.97