YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|196156622, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	32	0.93
Non-Cytoplasmic	33	50	0.91
Transmembrane Helix	51	72	0.91
Cytoplasmic	73	89	0.93
Transmembrane Helix	90	112	0.92
Non-Cytoplasmic	113	143	0.96
Transmembrane Helix	144	163	0.94
Cytoplasmic	164	184	0.92
Transmembrane Helix	185	209	0.84
Non-Cytoplasmic	210	228	0.87
Transmembrane Helix	229	250	0.92
Cytoplasmic	251	261	0.88
Transmembrane Helix	262	284	0.92
Non-Cytoplasmic	285	318	0.93
Transmembrane Helix	319	339	0.89
Cytoplasmic	340	345	0.88
Transmembrane Helix	346	365	0.95
Non-Cytoplasmic	366	403	0.91
Transmembrane Helix	404	425	0.88
Cytoplasmic	426	445	0.83
Transmembrane Helix	446	465	0.95
Non-Cytoplasmic	466	472	0.74
Transmembrane Helix	473	494	0.92
Cytoplasmic	495	656	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETENKSPL NKPVFLTSSA LIICLLIFAA GTPELADSIF QKLQDVIVSN GSWFYVLTVT  60
   61 IIVLAVVYLG MSRYGEIKLG PDHATPEFSF GTWLSMLFAA GMGIGLMFFG VAEPLMHFMA 120
  121 PPTAQAESID AVREAMKTTF FHWGIHAWAI YAVVALILGY FAYRQNLPLT LRSALYPLIG 180
  181 DRIYGWPGHV VDIFAVTSTV FGISTSLGFG ASQVNAGFNY LFGLPSNTGV QIAIMAGVVG 240
  241 LAVISVTTGL DKGIRRLSET NMVLAIILLL IVLFLGPTVF LLQAFMQNTG AYLSDIVRNT 300
  301 FNLYTYEKTD WIGGWTIFYW GWWLAWAPFV GLFIARISFG RTIREFVIGV LLIPSAFTLF 360
  361 WMTIFGNGAI DQVLVQGKDV LAQMVNDDTS VALFVFLEQF PFSSVLSFIA VLMVIIFFVT 420
  421 SCDSGAMVVD MLCSHGENNT PLWQRVYWAV GVGIVSSILL YAGGLGALQT MTIAAALPFA 480
  481 IVLLIAISGL LKALRIESYK RESLMVLAGS PQHSDSDKNW KERLENIVTF PDEKAVRRYI 540
  541 NKVVKPAMTE VGEEFKEQQF DVRIEDTEEA LTLTVELGGD PEFVYAVYPT STEQPEFGPT 600
  601 DTPRLDENEK ATYYRAEVHL SEGGQNYDIM GWSKISVIND VIDHYHKHQH FIHLLK