YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88774162, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.89
Transmembrane Helix	28	50	0.90
Non-Cytoplasmic	51	62	0.83
Transmembrane Helix	63	84	0.90
Cytoplasmic	85	93	0.72
Transmembrane Helix	94	114	0.92
Non-Cytoplasmic	115	125	0.67
Transmembrane Helix	126	147	0.75
Cytoplasmic	148	159	0.86
Transmembrane Helix	160	188	0.74
Non-Cytoplasmic	189	200	0.65
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	235	0.70
Transmembrane Helix	236	254	0.71
Non-Cytoplasmic	255	283	0.87
Transmembrane Helix	284	306	0.87
Cytoplasmic	307	324	0.84
Transmembrane Helix	325	348	0.87
Non-Cytoplasmic	349	356	0.77
Transmembrane Helix	357	377	0.93
Cytoplasmic	378	470	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITASTKLSA LFAAKHDGQA AAKHPYDVTL ILIALALMSI GVIIVTSASM PVADRLHDNP  60
   61 FYFAIRHGIY IVGAIIAAMI VLNLPMQFWR MTNPYLLLAA IVLLLAVLVV GRTVNGSTRW 120
  121 LAIGPITIQA AEPAKLFFFA YLAGYLVRRY EEVTENLKGF LKPLVVFFVL AMLLLLQPDL 180
  181 GTVVVMFATT IGLLFLAGAR LWQFFALVFV GILAVVALIV FEEYRLKRVT SFLDPWADPF 240
  241 GAGYQLTQSL MAYGRGNWFG QGLGNSLQKL EFLPEAHTDF VMAILAEELG FVGVVAVLGL 300
  301 ILWMVLRALR IGNQALEKGR AFDGYLAYSI GIWFSFQTAV NIGASAGILP TKGLTLPLVS 360
  361 YGGSSLIIMS IAVAILLRID FELRVDGVQA IGRGDARDAK QKPRRKKPIA AGVAKDADNN 420
  421 GKDKTVDDDD NFASSTVEAK PATKASSAED EGKAGIKAIL ARVAQEADNG