YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|196111480, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKAPVYAQT ADVQTVQPSN ENDAALYSLA AKLPSAKLNQ MESLVTEISQ VLHPKTREIL  60
   61 SLVLNGDLYY IKSNRLLVAA IKVGKEYELT DVLHDSELAS VKKSKIRKVR TNNRLRGLIR 120
  121 SAIAVLDLNS PNKDVRLQAV KQLLDNPSTM GLDAITLRLD KEEDPEVSEL MNVVLSLNQL 180
  181 KTGEHQAKLV AVSDLESSLQ PEVRNTMANI LRELPQSQRN AQEAELAAAL NEVIKNIDAK 240
  241 RSRYGFIENV FFGLSLGSVL LLAAIGLAIT FGVMGVINMA HGEMIMLGAY TTYVIQITFP 300
  301 SLIEYSLLMA IPAAFLVSGF VGVLIERGVI RFLKGRPLET LLATFGVSLI LQQLVRTVFS 360
  361 PLNRQVQAPE WMTGSWVINP VFSLTYNRLY IIIFSLVVFF TLMLILKKSS LGLHVRAVSQ 420
  421 NRDMARALSI KSDWVDAATF GLGSGIAGVA GVVLSQLTNV GPNLGQAYII DSFLVVVFGG 480
  481 VGNLWGTLVA AMSLGTINKF LEPITGSVLA NIIVLVGLVL FIQKRPKGLF PQKGRSAD

Type	Start	End	Confidence
Cytoplasmic	1	249	0.88
Transmembrane Helix	250	274	0.90
Non-Cytoplasmic	275	304	0.75
Transmembrane Helix	305	325	0.91
Cytoplasmic	326	337	0.76
Transmembrane Helix	338	356	0.84
Non-Cytoplasmic	357	385	0.83
Transmembrane Helix	386	406	0.92
Cytoplasmic	407	433	0.87
Transmembrane Helix	434	455	0.88
Non-Cytoplasmic	456	466	0.76
Transmembrane Helix	467	491	0.82
Cytoplasmic	492	502	0.66
Transmembrane Helix	503	522	0.93
Non-Cytoplasmic	523	538	0.84