YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|196157868, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	27	0.97
Cytoplasmic	28	41	0.84
Transmembrane Helix	42	62	0.94
Non-Cytoplasmic	63	94	0.94
Transmembrane Helix	95	114	0.92
Cytoplasmic	115	121	0.77
Transmembrane Helix	122	144	0.88
Non-Cytoplasmic	145	176	0.94
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	210	0.84
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	247	0.89
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	274	0.85
Transmembrane Helix	275	294	0.95
Non-Cytoplasmic	295	311	0.81
Transmembrane Helix	312	332	0.94
Cytoplasmic	333	351	0.91
Transmembrane Helix	352	374	0.92
Non-Cytoplasmic	375	389	0.89
Transmembrane Helix	390	412	0.86
Cytoplasmic	413	424	0.84
Transmembrane Helix	425	444	0.92
Non-Cytoplasmic	445	448	0.86
Transmembrane Helix	449	469	0.87
Cytoplasmic	470	496	0.92
Transmembrane Helix	497	518	0.91
Non-Cytoplasmic	519	622	0.96
Transmembrane Helix	623	642	0.95
Cytoplasmic	643	685	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPEIGNIAL TLALVLSILL AVYPLWGAHR KHEALMATAK PLAIGLFTFT LIAYVCLTYA  60
   61 FVTDDFSVAY VAQHSNSRLP IYYKITAVWG GHEGSFLLWV LMLSIWTVAV AIFSKGIPLA 120
  121 MVARVLSVLG MVGIGFYLFM LLTSNPFDSM LPFFPVDGRD LNPLLQDFGM IIHPPMLYMG 180
  181 YVGFSVAFAF AISALISGQL DSTWARWSRP WVIAAWAFLT VGIALGSWWA YYELGWGGWW 240
  241 FWDPVENASF MPWLVGTALM HSLAVTEKRK AFKSWTVLLA IAAFSLSLLG TFLVRSGVIV 300
  301 SVHSFASDPT RGLFILGILI VLSGFGLLLY AMRAASLKSP GRYQAFSREV LLMGNNVFLC 360
  361 AATLVVLLGT LLPLVHKELG LGSISVGAPF FNQMFTLLIV PFVLMLGLGP LTRWKQQKAS 420
  421 ELQKQLLVAG GIALSAGVLV NFAYDEPTYM GVLGMVLVFW ILVTTVQEVM QRLAAMPSSN 480
  481 TENASVIAKL RKLTPSHWGM VLGHVGFAIC IIGITLVSNY ELERDVRMDI GDTVSLGGYD 540
  541 FSFRDVRKVE GPNFNADKGI FDVYKNGEMI AHLEPEKRLY IVQRMPMTEA AIHSNLARDL 600
  601 FIAMGEPLDN GAWAIRIYIK PFVIWLWAGA VVMAIGGIFS ISDKRYRMAK VKKLKRVLGS 660
  661 KSVASTGTPN THASAVSRVS TKGDA