YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88793796, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAK TERAYQLCLT LQPWFWAGAL LCLSVGTVWG LAFAPQDYQQ GDSFRIIYIH  60
   61 VPSAILSMGT YVAMAIAALV GMVWQWRTAY MSMIAMAPIG AVMTFIALFT GAAWGKPMWG 120
  121 AWWVWDARLT SELILLFLYM GVIALYGAFE DKQQAGKAAG VMALVGVVNI PIIHYSVEWW 180
  181 NTLHQGATIS KFDNPSIAPE MLWPLLISLL GFAFFIGAVT TVRLRNEIVL REMHRPWVQA 240
  241 LAISQLASKQ QVNQSVKGGN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	58	0.91
Transmembrane Helix	59	83	0.86
Cytoplasmic	84	92	0.73
Transmembrane Helix	93	114	0.91
Non-Cytoplasmic	115	128	0.87
Transmembrane Helix	129	149	0.92
Cytoplasmic	150	157	0.84
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	201	0.95
Transmembrane Helix	202	224	0.91
Cytoplasmic	225	260	0.98