YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157123439, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRSLAKTR FLHHLRGYTA SAIKSEPLSA ALITPSPGHC QQQHFRTIHQ GKHLRKAVSV  60
   61 SVSEPIGNSS RTIRSVAYLD QKGDKLLVVE LVNGQRYEFP LVWLRDNCQC SECFHPGSHS 120
  121 RILNWELFDV DGVELKRCSV SDDGGRVQLL WSDGHRSEFT SDWLLDRNFT GENTKEYLDE 180
  181 WYRPPPQLWR KEEFSGIMKN FEFKDVINSD DALRGWIEAL IRYGTVMIKN APLTEQECRR 240
  241 LAERVGFIRK THYGEEFIVK AKEGTSNVAY LSTPLQMHTD LPYYDYKPGC NLLHCLVQSR 300
  301 SQGGQNLLAD AFYVADLMRR EYPKDFRLLS ETLVNWTDIG EDEGGQFHSI YRAPVICVGR 360
  361 DGNLERINHS VPQRDSFFNV PLDRVQPWYR AMARFVKLIH QEAVEFKTMP GDILTFSNVR 420
  421 MVHGRTGYTD TEVNTRHIVG AYLDWDEIYS KLRVLKGLDA ARKKDM

Type	Start	End	Confidence
Signal Peptide	1	40	0.82
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	466	0.99