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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|108882842, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTTSNSAN DGAGGTSSSN AHRKGHRRNE SMYAMTGLYA EAQTDDSSAD IPQDTEPEES  60
   61 LPTSINTVTT DTVIKCHSRQ PSNSVMMMER EKPLPNVLLD NEDYSRDCGI LTCRPSAIQK 120
  121 FARIKVFVLL LSILVTLQQA LSSGYINSVI TTIEKRFEIP SSLSGLVASS YEIGNVITVI 180
  181 FVSYLGSRRH IPVWIGIGAV IMGIGSLVFM VPHFTGEPNP GIMIDNKTAD NICRLVSVRE 240
  241 QDMGLGRLSN SLSNPPLTTH NLRGDNCLKS KASTFGPVIL FVIAQILLGG GGSPLFTLGT 300
  301 TYVDDHVRKE SSSMYIGAMY SMAAFGPVLG FLLGAYLLSF HMDSFSGSDI NIDQDDRRWV 360
  361 GMWWGGFLVC GILLILVAIP FFSFPKVLTR EKKKIRIAEQ KLPQLQQLSA NNSSSLSRPP 420
  421 PPNQSQTHQL QQQPSQQQQQ QQQTLGGSSQ SGSSSKPHED TGYGKDIKDI PLSMWRLVTN 480
  481 PVYIVTCLGA CMELMIVSGF VVFLPKYLET QFSLGKSQAS VYTGSIAVPG ACIGIFIGGC 540
  541 ILKRFQLKPK GAVQFVLVSN LVCLSCYGLL FFLGCENLKM AGTTIPYYNS SPAHNVEPFQ 600
  601 VNLTAACNFG CECHMYDVEP VCGNNGLTYF SPCHAGCTAF SSSSNYTNCA CVQANVTNVY 660
  661 TGAEGAQAQA LNAHENFAEV TVVPVATAGV CNKPCRTIYP FLILLFFMTF VVASTQMPLL 720
  721 MIVLRSVSEE ERSFALGMQF VIFRLFGYIP APIVFGNLID SSCLLWKSTC GEKGGRCLIY 780
  781 DIEKFRYKYV GVCASIKIIA LAIFIIDWWL VRRRKNLDKL NPMSANELVG SIISLDKLFE 840
  841 EKGNLDGQVV PFNGECISGD SIGDNNSKRV LIASRHLRND SKSIQLEYRY DDAPAQHYHR 900
  901 PRKHIRSNSC DIKIQRSNSA TNRETDFHDW KLKRFMRHHT RNNSRDLDQE HCCRQQQQQA 960
  961 TSHLGRWIAL HNSNNEQPTS NIRYILNHLK NNNVDGHSKL NYSNSCSGGA PCNAPKKKRH1020
 1021 TRNYSYGQEF SFLPNNVIIR LDNDIANKFL ANNGGGSSSR KSSFSHDVNL LKHANKLNNC1080
 1081 AGASGVAGAG VSDLTEELES KYAKGSPHSY GHSRNNSKDL NLLNTVVGES SGSGGILGGI1140
 1141 KALIEDSNSI LRHRRTNSKD LKYSGYQPCE PASSASSCSV SSSNIRKFSG NGDDHLGHQH1200
 1201 YVQHQLGHHH QGTSGLVSGP TPAAVTGVGS NGATSGQAES MQLLMDKASN VLEENCNESG1260
 1261 SKSTDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle