YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108882214, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHSQMEDSQ YQIRQQILNP NQRQQLEDNR RIKEQMQQLQ RDDASPSHMY IRKLEFQADV  60
   61 NLLDKHDSFY HTTKSLLVLF QIMGVMPIVR SPKGVNMPRT TFTWFSKAFI WAYFIYACET 120
  121 VLVVLVAKER IKRFISTSDK RFDEVIYNII FMSLLVPHFL LPVASWRNGS EVAKFKNMWT 180
  181 DYQYKYLMVT GKPIVFPKLY PITWVLCVVS WAVSFVIIMS QYYLQPDFQL THTFAYYHIL 240
  241 AMLNGFCSLW FVNCTAFGTA SKAFAQELSN ILATEQPADK LTEYRHLWVD LSHMMQQLGK 300
  301 AYSNMYGIYC LVIFFTTIIA TYGALSEIIE HGATYKEVGL FVIVFYCMGL LFIICNEAHH 360
  361 ASRRVGLNFQ ERLLNVNLTA VDKATQKEVE MFLVAIDKNP PTMNLDGYAN INRGLITSNI 420
  421 SFMATYLVVL MQFKLTLLRQ SARKALIPAL RANLTKLKEN

Type	Start	End	Confidence
Cytoplasmic	1	71	0.87
Transmembrane Helix	72	90	0.76
Non-Cytoplasmic	91	107	0.79
Transmembrane Helix	108	127	0.92
Cytoplasmic	128	144	0.87
Transmembrane Helix	145	165	0.73
Non-Cytoplasmic	166	199	0.68
Transmembrane Helix	200	224	0.86
Cytoplasmic	225	233	0.65
Transmembrane Helix	234	257	0.84
Non-Cytoplasmic	258	304	0.64
Transmembrane Helix	305	325	0.95
Cytoplasmic	326	337	0.57
Transmembrane Helix	338	360	0.85
Non-Cytoplasmic	361	414	0.66
Transmembrane Helix	415	435	0.68
Cytoplasmic	436	460	0.76