YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157128818, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	101	0.98
Transmembrane Helix	102	121	0.91
Non-Cytoplasmic	122	141	0.74
Transmembrane Helix	142	162	0.87
Cytoplasmic	163	170	0.76
Transmembrane Helix	171	190	0.95
Non-Cytoplasmic	191	196	0.78
Transmembrane Helix	197	219	0.91
Cytoplasmic	220	228	0.78
Transmembrane Helix	229	249	0.93
Non-Cytoplasmic	250	256	0.76
Transmembrane Helix	257	279	0.90
Cytoplasmic	280	504	0.99
Transmembrane Helix	505	528	0.82
Non-Cytoplasmic	529	535	0.80
Transmembrane Helix	536	556	0.89
Cytoplasmic	557	566	0.88
Transmembrane Helix	567	587	0.94
Non-Cytoplasmic	588	594	0.70
Transmembrane Helix	595	616	0.91
Cytoplasmic	617	627	0.79
Transmembrane Helix	628	650	0.87
Non-Cytoplasmic	651	658	0.78
Transmembrane Helix	659	680	0.93
Cytoplasmic	681	704	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEESVECNE GKLITKNGGY SPVKQLENGD LVRNDSQKKI VQFDKATNGN NHNNVNTRAS  60
   61 YPEKSDEKSM HNGVASAGGD HSEIRTDEDP DDYEMVPPDG GWGWLVLAGS MLVNILVPGT 120
  121 IKSFGVLFVE FLEAFQASPS TAAWIPALCY FLYSSLGPLS SILSVKYSYR TVTIIGGTFA 180
  181 AVGMIITYWA TSVSFLYISY GVLVGTGAGL SFPPTVYIVT SYFVKLRGLA NGLCISGSAL 240
  241 GSIILPPVLR YLLVNFGYRG ACLIMGGITL NVWVAAIFYQ PVENHMKRVK KTKDIEEELV 300
  301 GNDTIMEESE TNDDLEEGLN IEKSAMKPKF MITGDDTPVA TPTLEHKSPD IFRFNPKHGL 360
  361 IDSFARSVSA AAVPASYHKE DHGHRHRKIS TPIKEEHRNL TFTTPLNESQ GSHFRLNRLN 420
  421 SMRSGQRPPR RSPSTSSFQY ISTPYHGSTL SALQPKEFAS HLSLRSIADS FKPASKHTGD 480
  481 KSDKSTDGQK YFDLSLLRDP SYLVILISNS TNAIGYTNFI ILLPAYAISL GFDKSLAAYL 540
  541 LSIVSTLDLV GRIGGSALSD TNLIPKTWYF VGGLSISGLA LAVLPLASSY TMVSVFCALF 600
  601 GLASGTYVGI TAVIMADMLG TERLTSSYGI SLFVNGILQL VGPPICGLIF EHIGDYRPLF 660
  661 TALGFILLVG SSLWGFMPFI HRNKLRKQQK AAEAQQDVEK SLIA