YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108880740, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTNEKDSV EIVIEETAES SISNETEPKP TAAVTPVVPE KVPKQEARKP TGGGGNARGR  60
   61 QLKPDSNGTR ARSSSRSPSR RNRRDTTAAQ NDAIPLLPVD EGRLPRQNPP TSGPEMDDDD 120
  121 GPTFIGPRDN RGIDDGFLPE KPTRNDRDLD VDRRRSPGRR NSNPTVPFPY APEFGPQLPP 180
  181 VIQTADGARV MPDVNVYQQK KNLAQGMMDL ALLSANANQL RYVLESYSRH PYFYFSLTFI 240
  241 STSIICQVAV GIGLIWKSRY NIKNQDDFCK ADRINNMVTI GIFLITLVNV LISAFGVAEP 300
  301 VQAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	232	0.93
Transmembrane Helix	233	256	0.92
Cytoplasmic	257	276	0.90
Transmembrane Helix	277	298	0.93
Non-Cytoplasmic	299	304	0.91