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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157104343, gi...
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITASEPLEF IPRGRQAVNE HPGPLVLKKP VSVPSDFILL QRMQDVNISL DESPVEFYKI  60
   61 RETYSELEDD IGGPAFLREA EINTEEELYV KGNTAVWTSG LISEEAAPHT CLTCENPIKF 120
  121 AFFSPRCFLS SEADDKRQKY RKKRSKTDHQ SKSAVCLMDG TSLRVYCGSG ENFVTSIECP 180
  181 ISNVWISNHG ILLEKEPSSA VLETHSIPMP RLFSLTHPLD EMCPVLIKMN NSTSYLTEAE 240
  241 FRVVFSCEEN NLVLMFDEKI GKHFVCFLRK ATDEEKHDIG CGSDSVSLSN TVFNVTGHFS 300
  301 HQATTPQPSA ATPQSFYKSS PRHSTSKLGQ LSFGATNSSP YANNLQFGQV GSFNLTAAGT 360
  361 AGITNRSHIQ GHPAAATTPL SRLQSTLGTS VSLMDVRKMG QAEPSKPIVP EHCLEHVWTD 420
  421 NISQWKEFPE MASKGFIHVD LVGDTYMCFL LPRSEKLSLV WIDDTSSNLI QISPATVATQ 480
  481 IPAVDAVCMK RLNMIAVLAP CGTLMLYSGP TQVGKVHVAG ILSSFVTSSA LSTSFAASQG 540
  541 YPRRSSLLPT VPPAQAETRF DEELHMLSPV QPLHAAATSS RLSNCSSIRD GSGNRLTLVF 600
  601 NNDKMFRISL PIMSESQLVS RCLLALRETL PKHLALELMI RWYGTKNAPG SKDFDGNREW 660
  661 EIFSGMVFQQ MGRPFPPLDS RLNKSNSKSS LDEPKKRRKS ENCLGTDNDW QYLLMQSGKT 720
  721 NTPVKEMDTA APVAYSSNKP LFGYIPSILY ALHLVYEDLK LEPMMRNELK LLSEFLFELS 780
  781 SDVKLEKFQL HYYLDFQHLV DLRSCCFIKE EDRTKFINPN DTDFENIPKI FPYIHMLIAN 840
  841 PNKPELSNYP CIERINNRSR DIILIIAYLY RVKGLTKWIT KQFEKLSVGL NLNLTDDIDQ 900
  901 MMANVIIKLL LKRGYNRVNI EKLPVSIHYL IAQYLETYRN KPINIYEADV YELLLRPELY 960
  961 AHATFDAENQ TTRSKKHTSG LKENSLTLRR KPQPEVIPKN EVKQEENGME NIDTKLLRLR1020
 1021 FPDDLRINDV KSFLNSSQPV TIDIVQAPNV SDHEFIEEQE KQLYALCIRT MALPVGRGMF1080
 1081 TLRASRPTAT QTLPIPKLCL TGKEIHRGAT IEIQQLEVPP NMNLWPTFHN GVAAGLRICS1140
 1141 DTPDIDSTWI TYNKPKGVAD IPTEHAGFLM ALGLNGHLKS LSFMSIYEYL VKCDEMISLG1200
 1201 LLLGISAAHR GTMDVKATKL LSVHTEALLP PTAVELDISQ NIQVASLMGI GLVYQGTAKR1260
 1261 HIAEVLLQEI GRPPGPEMEN YVERESYALT AGLALGLVTL EQGEKSTALR DLDIPDTLHY1320
 1321 YMVGGNRRPL VGAQKEKYKL PSFQIKEGDT VNIDVTAPGA TLALGLMYFR TGNEAIANWM1380
 1381 KPPDTTYLLD FIRPDLLLLR IVAKNLIMWH EIDASTDWVY SQIPRALSEL IRNRLPTDHQ1440
 1441 SQPTDHEAQC QAYCNIVCGA AICIGLKYAG TADERAFTTL HFLLKYILGL SGRPFGDFAG1500
 1501 KQTLENCTIM ILLSLSLVQA GTGDLRVLRA IRMLRSRFGQ CHVTYGSHMA VHMALGFLFL1560
 1561 GAGRYTLSRS PEAIAALICS IFPKFPIHSN DNRYHLQAFR HLYVLAIEPR LFLPRDIDTG1620
 1621 KLCLCEMYYL EKSKTEPVKV LAPCMLPELH TLSKVYVKES NYWHVYFDQE NWRDLENILK1680
 1681 AGGCIDLKQR AGCLSYLEDP NRLKSMLTQT LTTSKYNSWK IDENGLLAFS TDQRISNIAT1740
 1741 KFLLTADHNG IDEIEAIPAS ERNIIQMLML QTYDCLTHDK MHGLTIFMDL MNSIVNFDSS1800
 1801 CNASELWQFR IIAAIISKRK SIAESDMLVS QDMLQSMVDR IKLRMEDMLK DSGHLIRSYV1860
 1861 VGVTAERSLV DLLSELCNEG RMRIARLLTF YDLPIRILSN DVLDRISQTD YLQFVCGMQE1920
 1921 QYPELSTSTV CHMAEALGLK SVLEKI

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