YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157106361, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSGSNNAM YLRQQFSALL GNTSSSIKFI CISTLVGYAL SFSDRAVDIL SVTPGYLMPP  60
   61 TFWIWTIFTF CFIELHFWEV LVDLITVGLC GKLIEPSWGQ MEMLQYFAIT NTGVAILTSF 120
  121 YYLFYSMITK DAEFLFDVHI HGLAGMNAAV SVAVTQIMPD HLIARTPLGK FSNRNVPLTV 180
  181 VIVSIIMWAI GLLDGTYPAM FASGLYVSWV YLRFYQRHSN GTRGDSAENF RFASFFPNVL 240
  241 QPFVSLIANP VYLACLRIGL VKRLTPQQSN SSSLQSVSVH SLVGVDPHDM ERRRQIALKA 300
  301 LSERLSKTTD SSRQNTLPKS FPQTGASGKH HHHHHGHHHG GHHHHGGGHL PFPMTMDRPA 360
  361 IPLPPPPSKS ALKSADSTKP TNSNSGVAGS NSTTTVDLIN LDQSGPSQPS GSSTTNT

Type	Start	End	Confidence
Cytoplasmic	1	18	0.87
Transmembrane Helix	19	41	0.87
Non-Cytoplasmic	42	61	0.82
Transmembrane Helix	62	82	0.88
Cytoplasmic	83	102	0.79
Transmembrane Helix	103	125	0.90
Non-Cytoplasmic	126	137	0.86
Transmembrane Helix	138	158	0.88
Cytoplasmic	159	175	0.79
Transmembrane Helix	176	201	0.80
Non-Cytoplasmic	202	238	0.69
Transmembrane Helix	239	261	0.77
Cytoplasmic	262	417	0.78