YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88711060, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	61	0.94
Non-Cytoplasmic	62	82	0.89
Transmembrane Helix	83	103	0.96
Cytoplasmic	104	116	0.86
Transmembrane Helix	117	140	0.82
Non-Cytoplasmic	141	160	0.95
Transmembrane Helix	161	183	0.92
Cytoplasmic	184	222	0.97
Transmembrane Helix	223	243	0.94
Non-Cytoplasmic	244	258	0.87
Transmembrane Helix	259	281	0.90
Cytoplasmic	282	298	0.91
Transmembrane Helix	299	322	0.87
Non-Cytoplasmic	323	342	0.91
Transmembrane Helix	343	362	0.94
Cytoplasmic	363	368	0.91
Transmembrane Helix	369	391	0.88
Non-Cytoplasmic	392	410	0.89
Transmembrane Helix	411	432	0.91
Cytoplasmic	433	578	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHYEAPIR KPLVLGDKGY HDVTVDIAAP VEGRANKHWW IVFSIALAAF LWGIGCIIYT  60
   61 ISTGIGTWGL NKTVNWAWDI TNFVWWVGIG HAGTLISAVL LLFRQKWRMA INRSAEAMTI 120
  121 FSVVQAGLFP IIHMGRPWLA YWVLPIPNQF GSLWVNFNSP LLWDVFAIST YLSVSLVFWW 180
  181 TGLLPDFAMI RDRAVLPFQK KIYSLLSFGW TGRAKDWQRF EEVSLVLAGL ATPLVLSVHT 240
  241 IVSFDFATSV IPGWHTTIFP PYFVAGAVFS GFAMVNTLLI IMRKVCRLEA YITVQHIELM 300
  301 NIVIMITGTI VGCAYITELF MAWYSGVEYE QYAFLNRATG PYWWAYWAMM SCNVFSPQFM 360
  361 WFKKLRTSIM FSFFISIIVN IGMWFERFVI IVTSLHRDYL PSSWSMFSPT FVDVGTFIGT 420
  421 IGFFFVLFLL YARTFPVIAQ AEVKTILKSS GEKYKKLREA GKPLYQISGN TKVGETVEEV 480
  481 VEEVNEEVND SAKDVSSLLD SIGVFDASKD KADDLKKVKG IGPQMEKTLN QIGIFTFAQV 540
  541 SRMTEKEYNL LDSITESFPG RAQRDDWAGQ AKKLNNNQ